software

PIrANHA

Scripts for file processing and analysis in phylogenetics and phylogeography.

NOTE This software repository, despite several minor-version releases, is still under development with the first major-version release expected sometime later this year.


MAGNET

Shell script pipeline for inferring ML gene trees for many loci (e.g. genomic RAD loci).


GaussClust

Clustering using Gaussian mixture modeling for species delimitation and classification.


MissingDataFX

Testing effects of missing data on phylogenetic inferences.


RAPFX

Sensitivity analysis of RADseq assembly parameter effects on downstream genetic analyses.


GBSequenceMiner

Tool for mining GenBank accession numbers & DNA sequences from manuscript PDFs